I've been reading my 'Subaru Performance Handbook' brake section and it has a note stating:
"Avoid fitting new discs and pads at the same time, because with use, discs form a heat hardened surface allowing them to bed in new soft pads and vice versa for old pads and new discs"
I always fit new pads when I change the discs so that you start off with two 'flat' contact surfaces.
What's the best way to do it?